CDS

Accession Number TCMCG016C07405
gbkey CDS
Protein Id OMO89234.1
Location complement(join(27227..27285,27391..27465,27566..27673,27837..27960,28553..28670,29053..29183,29306..29366,29583..29679,30647..30734,31428..31538,31756..31801,32867..32939,33754..33871,34323..34385,34492..34566))
Organism Corchorus capsularis
locus_tag CCACVL1_07974

Protein

Length 448aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215142; BioSample:SAMN03290679;
db_source AWWV01008796.1
Definition Pseudouridine synthase I, TruA [Corchorus capsularis]
Locus_tag CCACVL1_07974

EGGNOG-MAPPER Annotation

COG_category J
Description tRNA pseudouridine synthase
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03016        [VIEW IN KEGG]
KEGG_ko ko:K01855        [VIEW IN KEGG]
EC 5.4.99.45        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway -
GOs GO:0001522        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006399        [VIEW IN EMBL-EBI]
GO:0006400        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008033        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009451        [VIEW IN EMBL-EBI]
GO:0009982        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0016556        [VIEW IN EMBL-EBI]
GO:0016853        [VIEW IN EMBL-EBI]
GO:0016866        [VIEW IN EMBL-EBI]
GO:0031119        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1990481        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTCAAAGCTGGATGGAGAAGATGAGGTTGTTAGCTTGAGATCCCAACTACACTCTCTCCAAATTAGACTCAAGGAATTAGAGGCTGAAAATGCAAAGATGTCATCTCAACTCTCCAAATCTTGTTGCCATAATAAGACAGAGGATATGCTCAATGGTTCTGGTGTAGAGCGTTTACATCCGGGTGTGGCAAGTCACAGCAAAAACATTGGAGGTGATAAGGACAGAAAAAAGAAAGCAATAGAAAGAATTCCAGGTTCTAATTTGGAAATAATGGCTCACCATTCCAAGAGATACGTCGCTCTAAAAGTTATGTATTTTGGTCAGAGGTTTTATGGTTTTGCTTCAGAAGCACAAATGGATCCTACTGTTGAGTCTGAACTTTTCAAAGCTTTTGAGAAAACAAGGCTTTTAGTTGGTGACAAGAAGGCTTCACTTTACTCAAGGTGTGGCAGAACGGATAAAGGAGTCTCCTCTGTTGGCCAAGTGGTTGCATTGTTTTTAAGGTCAAACCTCAAAGAAGCTGATGCAAACAACAAAATGTCAGGAGAATCAATTCCAGAGACGAGAACTGAAGGAGAAATTGATTATGTGAGAGTACTGAATCGAGTCCTTCCAAACGATATTCGAATTTTAGGATGGAGTCCTGTTTCAGTTGATTTCAGTGCAAGGTTTAGTTGTTTGGCTAGAGAATATAAATACTTCTTTTGGAGAGGAAATTTGAATCTCCCAGCTATGGAGAATGCAGGAAAGAAATTTATAGGAGAACATGACTTCAGAAACTTTTGTAAGATGGATGCAGCAAATGTACACAACTATAGGCGGCGTGTTACAATGTTTGAAATTTGTTCTTCTAATATGAGGTTTGAAGGCAATGAGCTTTGTGAAATTAGAGTTAAAGGTAGTGCTTTCCTATGGCATCAGGTGCGGTGCATGGTTGCTGTACTATTTATGATTGGCCAAGGTCTCGAATCAGTTGATGTGATAGATGCTTTACTGGACACTCAGAAGACACCAAGAAAACCTCAGTATGCCATGGCTCCAGAAATACCGTTGGTCCTTCAATCCTGTGAATTTGAAGATGTCAAGTTTATTTGCTCATCAGATTCTGGGCAAGCATTACGCATACACTTGGATAATGAATGCCGAGCATACCAGCTTCAATCTGCAATTTACAGGGAGGCAGTTAGAAGCTGCTTGCCTTTAGCAAATGACCAAAACTTACTGAATAAGGGAACAATCAAGAAGGTGGCTTCCCATGTTCCTCTCTTGTCCCGGCCAACTGAACAGGTGTCACTAAATGCATCTAATACTGCCAAAAGAAAAGATTGTCCAGGAATATTTTAA
Protein:  
MSKLDGEDEVVSLRSQLHSLQIRLKELEAENAKMSSQLSKSCCHNKTEDMLNGSGVERLHPGVASHSKNIGGDKDRKKKAIERIPGSNLEIMAHHSKRYVALKVMYFGQRFYGFASEAQMDPTVESELFKAFEKTRLLVGDKKASLYSRCGRTDKGVSSVGQVVALFLRSNLKEADANNKMSGESIPETRTEGEIDYVRVLNRVLPNDIRILGWSPVSVDFSARFSCLAREYKYFFWRGNLNLPAMENAGKKFIGEHDFRNFCKMDAANVHNYRRRVTMFEICSSNMRFEGNELCEIRVKGSAFLWHQVRCMVAVLFMIGQGLESVDVIDALLDTQKTPRKPQYAMAPEIPLVLQSCEFEDVKFICSSDSGQALRIHLDNECRAYQLQSAIYREAVRSCLPLANDQNLLNKGTIKKVASHVPLLSRPTEQVSLNASNTAKRKDCPGIF